ROCK MAKER
Table of Contents
Welcome to ROCK MAKER Online User Manual
System Requirements
What’s New in This Release?
Installation Guide
Upgrading ROCK MAKER
Upgrading ROCK MAKER Version 3.18 to Version 4
Upgrading ROCK MAKER Version 4
ROCK MAKER Software Overview
Main Page
User Menu
User Preferences Submenu
Explore Menu
Experiment Page
Info Menu
Canvas Menu
Well Menu
Drop Menu
Compare Menu
Experiment Design
Experiment Design Concepts
Experiment Design Overview
Protein Formulation
Screens and Experiments
Fragment Screens
Optimizing Experiments
Layers Overview
Grid Layer
Random Layer
Custom Layer
Protein Layer
Seeding Layer
Screen Layer
Fragment Layer
Info Button
Experiment Design Tutorials
Designing Experiments
Creating a Project
Creating a Folder
Creating a Protein Formulation
Creating a Fragment Screen
Creating an Experiment
Creating Multiple Experiments Using Batchload Experiment Wizard
Creating an Optimization Experiment
Creating an Iterative Screen Optimization (ISO) Experiment
Creating a Seed
Creating Layers
Working with Layers
Creating a Grid Layer
Importing Ingredients Using DoE
Creating a Random Layer
Creating a Custom Layer
Creating a Protein Layer
Creating a Seeding Layer
Creating a Screen Layer
Creating a Fragment Layer
Working with Screens
Experiment Info Menu
Design Menu
Creating a Screen
Adding a Screen Lot
Creating Multiple Screen Experiments Using Screen Experiment Wizard
Repairing a Screen
Exporting and Importing Experiment Designs
Exporting and Importing an XML Screen File
Exporting and Importing a Text File
Generating a Report
Instant Drop Report
Experiment Report
Design Report
Ingredient Report
Image Report
Single Drop Report
Well Report
Score Report
Adding a Tag and Printing a Plate Barcode Label
Generating a Hits Report
Dispensing
Concepts
Tutorials
Setting Up Dispensing Properties
Manually Marking an Experiment as Dispensed
Viewing and Scoring Images
Using Navigator Button
Region Tab
Running On-Demand Imaging Sessions Using Image Now
Finding Drops
Marking Drops as Interesting
Viewing Focus Level Images Using Focus Level Button
Using Image Tools
Assigning Imaging Settings to ROI
Scoring Images
Scoring Images Using Auto Scoring Models
Sending Images to Autoscores
Exporting POI Coordinates
Saving Images
Viewing Images Using Slide Show
Deleting Inspections
Crystal Tracking
Concepts
Crystal Management
About
Virtual Crystal Harvesting
Synchrotron Trip Page
Crystal Container Submenu
Tutorials
Defining Pucks and Dewars
Creating Synchrotron Trips
Harvesting Crystals Virtually
Adding Cryoprotectants and Soaking Ingredients
Assigning Cryoprotectants and Soaking Ingredients
Modifying Crystals
Assigning Crystals
Assigning Crystals to Synchrotron Trips
Assigning Crystals to Pucks and Dewars
Exporting and Importing Synchrotron Trips CSV Files
Inputting Crystal Analysis Results
Generating a Synchrotron Trip Report
Searches
Concepts
Info Menu
Searches Results
Result Menu
Canvas Menu
Drop Menu
Compare Menu
Tutorials
Creating a Search and Filter File
Working with Search Query Section
Using Customize Columns Panel
Performing a Search
Using Filter Panel
Adding and Removing Filter Parameters
Modifying Filters
Using Information Panel
Using Table Panel
Searching Screen Hits Score Results
Practical Tips
Mouse Commands and Keyboard Shortcuts
Rotating a Screen Canvas
Using Support Tools
Generate Test Email
Participating in Usage Statistics
ROCK MAKER Lite
Are You an Administrator?
Managing Access Rights
Using Setup Menu
General Submenu
Ingredients Setup Submenu
Creating Ingredients
Working with Ingredient Types
Working with Liquid Classes
Working with Vendors
Importing Ingredients
Exporting Ingredients
Merging Ingredients
Merging Ingredient Stocks
Printing Ingredient Labels
Plate Types Submenu
Imaging Submenu
Scheduling Tab
Plates to Image
Imaging Settings Tab
Image Management Task Tab
Concepts
Tutorials
Creating an Image Management Task
Defining Image Management Task Parameters
Performing an Image Management Task
Using Settings Menu
Global Preferences Submenu
Modifying a Plate Label Tag
Administrator Submenu
Licensing Submenu
Find Orphan Images Submenu
Support Tools
Setting Up Test Email Configuration
Configuring SMTP Settings
ROCK MAKER
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Experiment Design
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Experiment Design Tutorials
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Designing Experiments
Designing Experiments
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Creating a Project
Creating a Folder
Creating a Protein Formulation
Creating a Fragment Screen
Creating an Experiment
Creating Multiple Experiments Using Batchload Experiment Wizard
Creating an Optimization Experiment
Creating an Iterative Screen Optimization (ISO) Experiment
Creating a Seed