ROCK MAKER

TABLE OF CONTENTS

  • ROCK MAKER® Crystallization Software Online User Manual
  • What’s New in ROCK MAKER 3.18?
  • Release Notes
  • System Requirements
  • The ROCK MAKER Software (Overview)
    • The Ribbon
      • Application Menu Button
      • Home Tab
      • Experiment Contextual Tab
      • Images Contextual Tab
      • Screen Contextual Tab
    • The Explorer
      • Plate State Icons
    • The Canvas
    • The View Bar
      • The Ingredients Tab
    • Personalization
    • Authorization
    • Startup Tips
    • Mouse Commands and Keyboard Shortcuts
  • Experiment Design
    • Experiment Design Concepts
      • Experiment Design Overview
      • Projects
      • Protein Formulations
      • Screens and Experiments
      • Fragment Screens
      • Iterative Screen Optimization (ISO)
      • Layers Overview
        • Grid Layers
        • Random Layers
        • Custom Layers
        • Protein Layers
        • Seeding Layers
        • Screen Layers
        • Fragment Layers
    • Experiment Design Tutorials
      • Designing Experiments
        • Creating a Project
        • Creating an Experiment
        • Adding Ingredients and Working with Layers
        • Creating Protein Formulations
        • Creating Fragment Screens
      • Creating Layers
        • Creating a Grid Design Layer
        • Creating a Random Layer
        • Creating a Protein Layer
        • Creating a Custom Layer
        • Creating a Seed and Adding a Seeding Layer
        • Creating a Fragment Layer
      • Working With Screens
        • Creating a Screen
        • Creating a Screen Lot
        • Importing Screen Conditions
        • Rotating a Screen Canvas
      • Creating Experiments in Batch
      • Finding Drops in a Plate
      • Creating an Optimization Experiment
      • Creating an Iterative Screen Optimization (ISO)
      • Editing Dispensed Experiments
      • Exporting Wells to an XML Screen File
      • Adding Tags and Printing Plate Labels
  • Dispensing
    • Dispense Overview
    • The Dispensing Tab
    • Dispensing Drops to Experiment Plates
    • Manually Marking Plates as Dispensed
    • Dispensing Properties
    • Tracking Ingredients with the Rack Editor
    • Printing Dispense Instructions
  • Viewing and Scoring Images
    • Concepts
      • Viewing Images Overview
      • Well, Drop, and Compare Tabs
      • Image Tools
      • Inspections
      • Navigators
      • Scoring Overview
        • Scoring Images Using Autoscoring Models
    • Tutorials
      • Working With Images
      • Adjusting Image Viewing Settings
      • Scoring Images
        • Filtering Hits Based on Scores
        • Scoring without Images
        • Using MARCO/Sherlock
          • Setting Up Auto Scoring Models
          • Sending Images to Autoscoring
          • Sending Images for Autoscoring Training
  • Crystal Tracking
    • Concepts
      • Crystal Management
    • Tutorials
      • Creating Puck and Dewar Definitions
      • Creating a Synchrotron Trip
      • Harvesting Crystals
      • Reviewing Crystal Track Data
  • Search and Filter
    • Search and Filter Interface
    • Edit Filters
    • Performing a Search
    • Graphs
    • Using Sample Searches
    • Comparing Images from Search Results
    • Finding Successful Screens
    • Searching for Drops without Scores
    • Copying Search and Filter Results to a Text Editor
    • Exporting Charts from Search and Filter
    • Exporting and Printing Search Results
  • Reports
    • Experiment Reports
    • Single Drop Reports
    • Ingredients Reports
    • Image Reports
    • Design Reports
    • Score Reports
    • Exporting FRAP Data Points
    • Instant Drop Reports
    • Well Report
    • Hits Report
    • Synchrotron Trip Report
  • Best Practices
    • General Best Practices
    • When in Doubt, Right-Click or Explore ROCK MAKER University
    • Seeding Experiments
    • Only Print Barcodes When Experiment Design is Complete
    • Viewing Search Results
    • Adding a Protein Layer
    • Resolving Imported Screen Condition Conflicts
    • Repairing a Screen
  • Administration
    • Setup
      • Setup Concepts
        • ROCK MAKER Setup Overview
        • Plate Types Setup
        • Ingredient Setup
        • General Setup
        • Imager Quota
        • Administrator and User Setup
        • System Properties
        • Imaging Node
        • Image Scheduling
        • Imaging Settings
        • Dispensing Properties
      • Setup Tutorials
        • Adding Plate Types
        • Assigning a Default Imaging Schedule to a Plate
        • Adding a Purchased Screen Lot
        • Setting Up a Global Imaging Schedule
        • Adding Score Groups and Scores
        • Enabling and Disabling Autoscores
        • Enabling and Disabling Import Focus Level
        • Defining Imaging Settings
        • Using FRAP Imaging Settings
        • Setup Users and Groups
        • Working with Ingredients
          • Adding and Editing Ingredients
          • Importing, Merging, and Exporting Ingredients
          • Importing Ingredients Using the DoE Tool
          • Searching for Ingredients
          • Printing Ingredient Labels
          • Calculating Buffer Titration Curves
          • Viewing the Buffer Mixing Curve
    • Image Management
      • Image Management
      • Creating an Image Management Task
      • Executing Image Management Tasks
      • Finding Orphan Images with Image Cleanup
      • Viewing Image Storage Usage
      • Deleting Images
    • Licensing
      • Online License Activation
      • Manual License Activation
      • License Activation and Reactivation
    • Usage Statistics
  • FAQs (Frequently Asked Questions)
  • How to Use This Help File
  • Appendix
    • RMXML Schema
ROCK MAKER
  • »
  • Viewing and Scoring Images »
  • Concepts »
  • Navigators

Navigators¶

There are two navigation tools built in to ROCK MAKER to help you navigate through your images. The first one, referred to as the “strip navigator” is the quick set of tools displayed at the top of your drop image. The second one is a larger set of tools that will appear at the bottom of your screen when you open an experiment that has images. It is accessed from the View bar by clicking the Navigator button.

Navigator Button on View Bar

Navigator Button on View Bar

The Navigator area contains all controls necessary to browse through plates, wells, drop, regions, imaging settings, and imaging sessions. Two modes are available on the Navigator, Thumbnail View and Composite View. Thumbnail View is the first mode you see. Composite View is accessible by clicking the Composite View button at the bottom-left of the Navigator. To bring up the full-size image of any thumbnail you see, double-click the thumbnail.

Navigator - Thumbnail View

Navigator - Thumbnail View

Thumbnail View¶

Thumbnail View provides four options for viewing the various images taken of a drop. You may navigate by Inspections, Imaging Settings, Regions, or Drops.

Navigate by Inspections¶

Selecting Inspections will display a thumbnail from each inspection of the currently selected well in the Navigator. This can be useful when you want to see an overview of crystal growth over time.

Navigate by Inspections

Navigate by Inspections

Navigate by Imaging Settings¶

Selecting Imaging Settings will display one thumbnail of each imaging setting available at the currently selected time point for the currently selected well.

Navigate by Imaging Settings

Navigate by Imaging Settings

Navigate by Regions¶

Selecting Regions will display images of different regions for the currently selected well. You will see regions if you have used automatic drop location on your plate (a ROCK IMAGER feature), or if you have drawn one or more regions using the Region of Interest tool and ROCK IMAGER has photographed those areas.

Navigate by Regions

Navigate by Regions

Navigate by Drops¶

Selecting Drops will display a thumbnail of each drop at the currently selected well for the currently selected time point.

Navigate by Drops

Navigate by Drops

Composite View¶

Composite View provides a map of which drops were imaged at what date and with which imaging setting.

Composite View

Composite View

Related System Properties¶

Systems Properties are how you change behind-the-scenes ROCK MAKER behaviors. For more information, please read Miscellaneous Properties.

Related Topics

  • Viewing Images Overview

  • Well, Drop, and Compare Tabs

  • Image Tools

  • Image Tuning

  • Inspections

  • Scoring Overview

  • Setting Navigator Preferences

  • System Properties



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