ROCK MAKER
TABLE OF CONTENTS
ROCK MAKER
®
Crystallization Software Online User Manual
What’s New in ROCK MAKER 3.18?
System Requirements
The ROCK MAKER Software (Overview)
The Ribbon
Application Menu Button
Home Tab
Experiment Contextual Tab
Images Contextual Tab
Screen Contextual Tab
The Explorer
Plate State Icons
The Canvas
The View Bar
The Ingredients Tab
Personalization
Authorization
Startup Tips
Mouse Commands and Keyboard Shortcuts
Experiment Design
Experiment Design Concepts
Experiment Design Overview
Projects
Protein Formulations
Screens and Experiments
Fragment Screens
Iterative Screen Optimization (ISO)
Layers Overview
Grid Layers
Random Layers
Custom Layers
Protein Layers
Seeding Layers
Screen Layers
Fragment Layers
Experiment Design Tutorials
Designing Experiments
Creating a Project
Creating an Experiment
Adding Ingredients and Working with Layers
Creating Protein Formulations
Creating Fragment Screens
Creating Layers
Creating a Grid Design Layer
Creating a Random Layer
Creating a Protein Layer
Creating a Custom Layer
Creating a Seed and Adding a Seeding Layer
Creating a Fragment Layer
Working With Screens
Creating a Screen
Creating a Screen Lot
Importing Screen Conditions
Rotating a Screen Canvas
Creating Experiments in Batch
Finding Drops in a Plate
Creating an Optimization Experiment
Creating an Iterative Screen Optimization (ISO)
Editing Dispensed Experiments
Exporting Wells to an XML Screen File
Adding Tags and Printing Plate Labels
Dispensing
Dispense Overview
The Dispensing Tab
Dispensing Drops to Experiment Plates
Manually Marking Plates as Dispensed
Dispensing Properties
Tracking Ingredients with the Rack Editor
Printing Dispense Instructions
Viewing and Scoring Images
Concepts
Viewing Images Overview
Well, Drop, and Compare Tabs
Image Tools
Inspections
Navigators
Scoring Overview
Scoring Images Using Autoscoring Models
Tutorials
Working With Images
Adjusting Image Viewing Settings
Scoring Images
Filtering Hits Based on Scores
Scoring without Images
Using MARCO/Sherlock
Setting Up Auto Scoring Models
Sending Images to Autoscoring
Sending Images for Autoscoring Training
Crystal Tracking
Concepts
Crystal Management
Tutorials
Creating Puck and Dewar Definitions
Creating a Synchrotron Trip
Harvesting Crystals
Reviewing Crystal Track Data
Search and Filter
Search and Filter Interface
Edit Filters
Performing a Search
Graphs
Using Sample Searches
Comparing Images from Search Results
Finding Successful Screens
Searching for Drops without Scores
Copying Search and Filter Results to a Text Editor
Exporting Charts from Search and Filter
Exporting and Printing Search Results
Reports
Experiment Reports
Single Drop Reports
Ingredients Reports
Image Reports
Design Reports
Score Reports
Exporting FRAP Data Points
Instant Drop Reports
Well Report
Hits Report
Synchrotron Trip Report
Best Practices
General Best Practices
When in Doubt, Right-Click or Explore ROCK MAKER University
Seeding Experiments
Only Print Barcodes When Experiment Design is Complete
Viewing Search Results
Adding a Protein Layer
Resolving Imported Screen Condition Conflicts
Repairing a Screen
Administration
Setup
Setup Concepts
ROCK MAKER Setup Overview
Plate Types Setup
Ingredient Setup
General Setup
Imager Quota
Administrator and User Setup
System Properties
Imaging Node
Image Scheduling
Imaging Settings
Dispensing Properties
Setup Tutorials
Adding Plate Types
Assigning a Default Imaging Schedule to a Plate
Adding a Purchased Screen Lot
Setting Up a Global Imaging Schedule
Adding Score Groups and Scores
Enabling and Disabling Autoscores
Enabling and Disabling Import Focus Level
Defining Imaging Settings
Using FRAP Imaging Settings
Setup Users and Groups
Working with Ingredients
Adding and Editing Ingredients
Importing, Merging, and Exporting Ingredients
Importing Ingredients Using the DoE Tool
Searching for Ingredients
Printing Ingredient Labels
Calculating Buffer Titration Curves
Viewing the Buffer Mixing Curve
Image Management
Image Management
Creating an Image Management Task
Executing Image Management Tasks
Finding Orphan Images with Image Cleanup
Viewing Image Storage Usage
Deleting Images
Licensing
Online License Activation
Manual License Activation
License Activation and Reactivation
Usage Statistics
FAQs (Frequently Asked Questions)
How to Use This Help File
Appendix
RMXML Schema
ROCK MAKER
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Index
Index